SEED Subsystem: Peptidoglycan Biosynthesis in Pseudomonas simiae WCS417

Experiments:

Role Gene Name L-Lysine 60 mM  
⨯
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) PS417_09540 -0.1
  PS417_04610 N.D.
D-alanine--D-alanine ligase (EC 6.3.2.4) PS417_04650 -1.7
D-alanine--D-alanine ligase A (EC 6.3.2.4) No genes
D-alanine--D-alanine ligase B (EC 6.3.2.4) No genes
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) PS417_20920 -0.4
  PS417_24705 -3.0
  PS417_05005 -0.1
Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) PS417_28455 N.D.
Glutamate racemase (EC 5.1.1.3) PS417_03620 N.D.
Glutamine synthetase type I (EC 6.3.1.2) PS417_01655 N.D.
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2) No genes
Glutamine synthetase type III, GlnN (EC 6.3.1.2) No genes
Glutamine synthetase, clostridia type (EC 6.3.1.2) No genes
Membrane-bound lytic murein transglycosylase B (EC 3.2.1.-) No genes
Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) PS417_24680 -1.5
  PS417_24715 -0.9
Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) PS417_26790 -0.2
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) PS417_01955 +0.6
  PS417_23825 -0.2
  PS417_28435 -0.1
Murein-DD-endopeptidase (EC 3.4.99.-) PS417_17270 -0.1
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) PS417_28455 N.D.
N-acetylglucosamine-1-phosphate uridyltransferase eukaryotic (EC 2.7.7.23) No genes
Penicillin-binding protein 2 (PBP-2) PS417_24725 N.D.
Penicillin-binding protein 4 precursor No genes
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase No genes
Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C PS417_03025 +0.0
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) PS417_04625 N.D.
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2) No genes
Rare lipoprotein A precursor PS417_24710 -2.3
Rod shape-determining protein RodA PS417_24720 N.D.
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) PS417_16315 N.D.
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) PS417_04405 N.D.
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) PS417_04640 N.D.
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) PS417_04645 N.D.
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) PS417_04630 N.D.
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) PS417_04615 N.D.
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) PS417_04620 N.D.

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