SEED Subsystem: DNA Repair Base Excision in Agrobacterium fabrum C58

Experiments:

Role Gene Name R2A with Cisplatin 0.0016 mM  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) Atu5097 +0.3
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Atu0840 -1.3
  Atu6090 -0.2
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD Atu4632 +0.1
  Atu5051 -0.0
  Atu5055 -0.0
DNA ligase (EC 6.5.1.2) Atu2082 N.D.
DNA polymerase I (EC 2.7.7.7) Atu0110 N.D.
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Atu0670 +0.2
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Atu3335 +0.3
  Atu3588 -0.4
Endonuclease III (EC 4.2.99.18) Atu4457 -0.1
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Atu0321 +0.2
Ku domain protein Atu4631 -0.3
  Atu5049 +0.1
  Atu5050 -0.0
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Atu1586 N.D.
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Atu2455 -0.0

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