SEED Subsystem: Purine conversions in Variovorax sp. OAS795

Experiments:

Role Gene Name Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days  
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2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) No genes
5'-nucleotidase (EC 3.1.3.5) ABID97_RS06935 N.D.
5'-nucleotidase family protein in cluster with NagD-like phosphatase No genes
AMP nucleosidase (EC 3.2.2.4) ABID97_RS00880 -2.2
Adenine deaminase (EC 3.5.4.2) No genes
Adenine phosphoribosyltransferase (EC 2.4.2.7) No genes
Adenosine deaminase (EC 3.5.4.4) ABID97_RS10115 +0.1
  ABID97_RS22065 +0.3
Adenosine kinase (EC 2.7.1.20) No genes
Adenylate kinase (EC 2.7.4.3) ABID97_RS16975 N.D.
Adenylosuccinate lyase (EC 4.3.2.2) ABID97_RS05015 -0.3
  ABID97_RS19710 N.D.
Adenylosuccinate synthetase (EC 6.3.4.4) ABID97_RS14280 N.D.
  ABID97_RS21930 +0.3
Deoxyadenosine kinase (EC 2.7.1.76) No genes
Deoxyguanosine kinase (EC 2.7.1.113) No genes
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) ABID97_RS23250 +0.2
GMP reductase No genes
GMP reductase (EC 1.7.1.7) ABID97_RS09140 +0.1
GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) ABID97_RS11645 -0.6
  ABID97_RS16400 N.D.
Guanine deaminase (EC 3.5.4.3) ABID97_RS22045 -0.1
Guanylate kinase (EC 2.7.4.8) ABID97_RS23660 N.D.
Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) No genes
IMP dehydrogenase related 1 (EC 1.1.1.205) No genes
IMP dehydrogenase related 2 (EC 1.7.1.7) No genes
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) ABID97_RS10105 -0.7
  ABID97_RS16415 N.D.
Inosine-guanosine kinase (EC 2.7.1.73) No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) ABID97_RS05955 -0.1
Nucleoside diphosphate kinase (EC 2.7.4.6) ABID97_RS14205 N.D.
Nucleotide pyrophosphatase (EC 3.6.1.9) No genes
Polyphosphate kinase (EC 2.7.4.1) ABID97_RS14575 +0.0
Possible hypoxanthine oxidase XdhD (EC 1.-.-.-) ABID97_RS14935 +0.2
Purine nucleoside phosphorylase (EC 2.4.2.1) No genes
Purine trans deoxyribosylase (Nucleoside deoxyribosyltransferase-I) (EC 2.4.2.6) No genes
Xanthine oxidase (EC 1.17.3.2) No genes
Xanthine phosphoribosyltransferase (EC 2.4.2.22) No genes
Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) ABID97_RS14285 -0.2
dATP pyrophosphohydrolase NudB (EC 3.6.1.-) No genes
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
putative Adenosine kinase (EC 2.7.1.20) No genes

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