SEED Subsystem: Polyhydroxybutyrate metabolism in Agrobacterium fabrum C58

Experiments:

Role Gene Name R2A with m-arsenite 0.8 mM  
⨯
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) Atu0503 -0.5
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) Atu3597 +0.7
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) Atu0503 -0.5
3-ketoacyl-CoA thiolase (EC 2.3.1.16) Atu4823 -0.4
Acetoacetyl-CoA reductase (EC 1.1.1.36) Atu2770 +1.1
Acetoacetyl-CoA synthetase (EC 6.2.1.16) Atu4130 -0.0
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) No genes
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Atu0990 +0.1
  Atu2308 -0.3
  Atu4131 +0.0
  Atu4839 -0.4
D-beta-hydroxybutyrate permease No genes
Enoyl-CoA hydratase (EC 4.2.1.17) Atu0733 +0.2
  Atu1417 -0.3
Intracellular PHB depolymerase (EC 3.1.1.-) Atu0015 -1.8
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase Atu1604 +1.5
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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