SEED Subsystem: TCA Cycle in Agrobacterium fabrum C58

Experiments:

Role Gene Name R2A with tungstate 375 mM  
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Atu2636 N.D.
Aconitate hydratase (EC 4.2.1.3) Atu2685 +0.6
Aconitate hydratase 2 (EC 4.2.1.3) Atu4734 +9.5
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) Atu1392 N.D.
  Atu4851 N.D.
  Atu5306 N.D.
  Atu5307 N.D.
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) Atu2632 N.D.
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) No genes
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Atu2635 N.D.
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) No genes
Fumarate hydratase class II (EC 4.2.1.2) Atu1616 N.D.
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Atu1870 N.D.
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) Atu2639 N.D.
Malate:quinone oxidoreductase (EC 1.1.5.4) Atu0811 -0.1
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Atu2643 N.D.
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Atu2642 N.D.
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Atu2637 N.D.
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Atu2638 N.D.
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase Atu2684 +0.8

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