SEED Subsystem: Formate hydrogenase in Escherichia coli BL21

Experiments:

Role Gene Name Mixed culture, Bdellovibrio bacteriovorus HD100_1  
Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) No genes
Formate dehydrogenase N alpha subunit (EC 1.2.1.2) No genes
Formate dehydrogenase N beta subunit (EC 1.2.1.2) No genes
Formate dehydrogenase N gamma subunit (EC 1.2.1.2) ECD_01434 -0.4
Formate dehydrogenase O alpha subunit (EC 1.2.1.2) No genes
Formate dehydrogenase O beta subunit (EC 1.2.1.2) ECD_03778 +0.1
Formate dehydrogenase O gamma subunit (EC 1.2.1.2) ECD_03777 -0.1
Formate dehydrogenase O putative subunit No genes
Formate dehydrogenase chain D (EC 1.2.1.2) ECD_03780 +0.2
Formate dehydrogenase putative subunit (EC 1.2.1.2) No genes
Formate dehydrogenase related protein No genes
Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2) No genes
Formate dehydrogenase-O, major subunit (EC 1.2.1.2) No genes
Formate hydrogenlyase hypothetical subunit No genes
Formate hydrogenlyase regulatory protein HycA ECD_02575 +0.3
Formate hydrogenlyase subunit 2 ECD_02574 -0.2
Formate hydrogenlyase subunit 3 ECD_02374 -0.1
  ECD_02573 +0.0
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit No genes
Formate hydrogenlyase subunit 4 ECD_02572 +0.1
Formate hydrogenlyase subunit 5 No genes
Formate hydrogenlyase subunit 6 No genes
Formate hydrogenlyase subunit 7 ECD_02569 +0.3
Formate hydrogenlyase transcriptional activator ECD_02581 -0.0
Hydrogenase-4 component A (EC 1.-.-.-) No genes
Hydrogenase-4 component B (EC 1.-.-.-) No genes
Hydrogenase-4 component C (EC 1.-.-.-) No genes
Hydrogenase-4 component D (EC 1.-.-.-) No genes
Hydrogenase-4 component E (EC 1.-.-.-) No genes
Hydrogenase-4 component F (EC 1.-.-.-) No genes
Hydrogenase-4 component G (EC 1.-.-.-) No genes
Hydrogenase-4 component H (EC 1.-.-.-) No genes
Hydrogenase-4 component I (EC 1.-.-.-) No genes
Hydrogenase-4 transcriptional activator ECD_02383 -1.3
Hypothetical protein YrhD No genes
Hypothetical protein probably related to Formate dehydrogenase function No genes
NAD-dependent formate dehydrogenase (EC 1.2.1.2) No genes
NAD-dependent formate dehydrogenase alpha subunit No genes
NAD-dependent formate dehydrogenase beta subunit No genes
NAD-dependent formate dehydrogenase delta subunit No genes
NAD-dependent formate dehydrogenase gamma subunit No genes
Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2) No genes
Putative formate dehydrogenase oxidoreductase protein ECD_01457 N.D.
  ECD_01459 +2.4
Putative formate dehydrogenase, cytochrome B subunit (EC 1.2.1.2) No genes
Putative formate dehydrogenase-specific chaperone No genes
formate dehydrogenase formation protein FdhE ECD_03776 -0.3
hydrogenase, HycC subunit, putative No genes
hydrogenase, group 4, HycE subunit, putative No genes
hydrogenase, group 4, HycG subunit, putative No genes
tungsten-containing formate dehydrogenase alpha subunit No genes
tungsten-containing formate dehydrogenase beta subunit No genes

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