SEED Subsystem: DNA repair, bacterial in Escherichia coli BW25113

Role	Gene	Name	LB + carbenicillin Time48hr
A/G-specific adenine glycosylase (EC 3.2.2.-)	b2064	asmA	-0.0
	b2961	mutY	+0.0
ADA regulatory protein	b2213	ada	-0.1
Alkylated DNA repair protein AlkB	b2212	alkB	+0.0
DNA mismatch repair endonuclease MutH	b2831	mutH	-0.3
DNA polymerase IV (EC 2.7.7.7)	b0231	dinB	-0.1
DNA polymerase-like protein MT3142	No genes
DNA polymerase-like protein PA0670	No genes
DNA recombination protein RmuC	b3832	rmuC	-0.0
DNA recombination-dependent growth factor C	b0393	rdgC	+0.2
DNA repair exonuclease family protein YhaO	No genes
DNA repair protein RadA	b4389	radA	-0.2
DNA repair protein RadC	b0247	ykfG	+0.0
	b2002	yeeS	+0.0
	b2644	yfjY	+0.0
	b3638	radC	+0.0
DNA repair protein RecN	b2616	recN	+0.1
DNA-damage-inducible protein I	b1061	dinI	-0.2
	b4533	ynfO	+0.2
	b4589	ylcI	-0.3
DNA-damage-inducible protein J	b0226	dinJ	+0.0
Endonuclease IV (EC 3.1.21.2)	b2159	nfo	-0.0
Endonuclease V (EC 3.1.21.7)	b3998	nfi	-0.1
Exodeoxyribonuclease III (EC 3.1.11.2)	b1749	xthA	-0.1
Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	b2509	xseA	-1.1
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	b0422	xseB	N.D.
Exonuclease SbcC	b0397	sbcC	+0.1
Exonuclease SbcD	b0398	sbcD	-0.0
G:T/U mismatch-specific uracil/thymine DNA-glycosylase	b3068	ygjF	+0.3
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72)	b3387	dam	-0.8
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	b1335	ogt	+0.1
	b2213	ada	-0.1
RecA protein	b2699	recA	-1.0
Recombinational DNA repair protein RecT (prophage associated)	b1349	recT	+0.2
SOS-response repressor and protease LexA (EC 3.4.21.88)	b4043	lexA	N.D.
Single-stranded DNA-binding protein	b4059	ssb	N.D.
Very-short-patch mismatch repair endonuclease (G-T specific)	b1960	vsr	-0.0