SEED Subsystem: Heat shock dnaK gene cluster extended in Pseudomonas putida KT2440

Role	Gene	Name	P. putida PUT10 MOI 0.1
Chaperone protein DnaJ	PP_4726		-3.9
Chaperone protein DnaK	PP_4727		N.D.
DNA replication intiation control protein YabA	No genes
FIG001341: Probable Fe(2+)-trafficking protein YggX	PP_0285		N.D.
FIG009886: phosphoesterase	No genes
Glutathione synthetase (EC 6.3.2.3)	PP_4993		+1.2
Heat shock protein GrpE	PP_4728		N.D.
Heat-inducible transcription repressor HrcA	No genes
HspR, transcriptional repressor of DnaK operon	No genes
Hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent	PP_3781		-0.1
MiaB family protein, possibly involved in tRNA or rRNA modification	No genes
Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)	PP_5100		-0.9
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster	No genes
RNA polymerase sigma factor RpoH	PP_5108		N.D.
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	PP_5101		-1.5
Ribonuclease PH (EC 2.7.7.56)	PP_5294		+1.3
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	PP_4985		+0.3
	PP_5019		N.D.
Ribosomal protein L11 methyltransferase (EC 2.1.1.-)	PP_4818		+0.2
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	PP_0250		-0.4
Signal peptidase-like protein	No genes
Translation elongation factor LepA	PP_1431		N.D.
Xanthosine/inosine triphosphate pyrophosphatase	No genes
rRNA small subunit methyltransferase I	PP_1326		-2.3
tmRNA-binding protein SmpB	PP_4733		N.D.