SEED Subsystem: DNA-replication in Pseudomonas putida KT2440

Experiments:

Role Gene Name P. putida South MOI 0.1  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) PP_5310 -0.5
ATP-dependent DNA helicase RecQ PP_4516 +0.1
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA PP_0010 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) PP_1215 -1.2
DNA polymerase I (EC 2.7.7.7) PP_0123 +2.4
DNA polymerase II (EC 2.7.7.7) PP_2393 -0.0
DNA polymerase III alpha subunit (EC 2.7.7.7) PP_1606 N.D.
  PP_4768 +0.2
DNA polymerase III beta subunit (EC 2.7.7.7) PP_0011 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) PP_0979 +0.3
DNA polymerase III delta prime subunit (EC 2.7.7.7) PP_1966 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) PP_4796 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) PP_0353 -0.2
  PP_4141 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) PP_4269 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) PP_0388 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN PP_4729 +0.1
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) PP_4672 N.D.
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) PP_4673 N.D.
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) PP_4674 N.D.
Helicase PriA essential for oriC/DnaA-independent DNA replication PP_5088 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA PP_1216 -0.7
Holliday junction DNA helicase RuvB PP_1217 -0.4
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein PP_1629 -0.4
Recombination protein RecR PP_4267 -0.5
Replicative DNA helicase (EC 3.6.1.-) PP_3893 -0.5
  PP_4873 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PP_1477 -0.0
Transcription-repair coupling factor PP_2148 -5.1

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