SEED Subsystem: Aromatic amino acid degradation in Pseudomonas putida KT2440

Experiments:

Role Gene Name P. putida South MOI 0.1  
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.-) No genes
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) No genes
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) No genes
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15) No genes
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) PP_2554 +0.0
  PP_3433 -0.1
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10) No genes
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) No genes
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) No genes
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase. No genes
Anthranilate dioxygenase large subunit No genes
Anthranilate dioxygenase reductase No genes
Anthranilate dioxygenase small subunit No genes
Aromatic amino acid transport protein AroP PP_0927 -0.2
  PP_4495 -1.1
Aromatic ring-opening dioxygenase No genes
Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28) PP_2552 +0.0
Homoprotocatechuate degradative operon repressor No genes
Indoleacetamide hydrolase (EC 3.5.1.-) No genes
Kynurenine formamidase, bacterial (EC 3.5.1.9) No genes
Phenylalanine hydroxylase transcriptional activator PhhR PP_4489 -0.8
Phenylalanine-4-hydroxylase (EC 1.14.16.1) PP_4490 -0.9
Phenylalanine-specific permease No genes
Predicted 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase No genes
Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase No genes
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase No genes
Putative 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase oxidoreductase protein (EC 1.2.1.60) No genes
Putative fumarylacetoacetate (FAA) hydrolase No genes
Tryptophan 2,3-dioxygenase (EC 1.13.11.11) No genes
Tryptophan 2-monooxygenase (EC 1.13.12.3) No genes
Tryptophanase (EC 4.1.99.1) No genes

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