SEED Subsystem: Glycine and Serine Utilization in Rhodanobacter sp. FW510-T8

Experiments:

Role Gene Name NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) OKGIIK_06595 kbl -2.3
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) OKGIIK_01305 gcvT +0.4
Cystathionine beta-synthase (EC 4.2.1.22) OKGIIK_01140 aF2118 -0.4
Cystathionine gamma-lyase (EC 4.4.1.1) OKGIIK_01180 metC -1.1
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) OKGIIK_10055 serA -2.2
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator No genes
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter OKGIIK_04305 cycA +0.0
  OKGIIK_09870 -0.2
Glycerate kinase (EC 2.7.1.31) OKGIIK_14005 -0.2
Glycine cleavage system H protein OKGIIK_01310 gcvH +1.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) OKGIIK_06740 gcvP2 +0.7
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) OKGIIK_01565 sdaA +0.1
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) OKGIIK_06910 serC -3.3
Phosphoserine phosphatase (EC 3.1.3.3) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) OKGIIK_11440 glyA -2.9
Serine transporter No genes
Seryl-tRNA synthetase (EC 6.1.1.11) OKGIIK_07570 serS N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) OKGIIK_13705 ilvA +1.1

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