SEED Subsystem: DNA-replication in Escherichia coli ECRC98

Experiments:

Role Gene Name GB_JK32  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) JDDGAC_19170 recG -0.2
ATP-dependent DNA helicase RecQ JDDGAC_17985 recQ -0.0
  JDDGAC_20480 -0.3
  JDDGAC_20485 +0.1
  JDDGAC_20490 +0.4
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA JDDGAC_18630 dnaA N.D.
  JDDGAC_25770 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) JDDGAC_00840 ruvC +1.1
DNA polymerase I (EC 2.7.7.7) JDDGAC_17775 polA N.D.
  JDDGAC_23835 xni -0.1
DNA polymerase II (EC 2.7.7.7) JDDGAC_14390 polB +0.3
DNA polymerase III alpha subunit (EC 2.7.7.7) JDDGAC_13730 dnaE N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) JDDGAC_18640 dnaN N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) JDDGAC_15450 holC +0.3
DNA polymerase III delta prime subunit (EC 2.7.7.7) JDDGAC_07205 holB N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) JDDGAC_10985 holA N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) JDDGAC_13560 dnaQ N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) JDDGAC_14890 holD -0.1
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) JDDGAC_11815 dnaX N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) JDDGAC_00970 holE -3.0
DNA primase (EC 2.7.7.-) JDDGAC_22295 dnaG N.D.
DNA primase (EC 2.7.7.-), phage-associated JDDGAC_06695 +0.1
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN JDDGAC_24810 recN +0.1
DNA replication protein DnaC JDDGAC_02475 dnaC -0.5
  JDDGAC_04625 ydaV N.D.
  JDDGAC_14940 dnaC N.D.
DNA replication terminus site-binding protein JDDGAC_02245 tus -1.9
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) JDDGAC_23720 recD -0.1
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) JDDGAC_23715 recB N.D.
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) JDDGAC_23705 recC N.D.
Helicase PriA essential for oriC/DnaA-independent DNA replication JDDGAC_17345 priA N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA JDDGAC_00855 ruvA N.D.
Holliday junction DNA helicase RuvB JDDGAC_00860 ruvB N.D.
Primosomal protein I JDDGAC_02470 -2.0
  JDDGAC_02830 N.D.
  JDDGAC_03175 eCs1768 +0.0
  JDDGAC_05820 eCs1768 -0.9
  JDDGAC_07045 eCs1768 +0.5
  JDDGAC_08695 +0.2
  JDDGAC_13235 +1.2
  JDDGAC_14935 dnaT N.D.
  JDDGAC_25505 -0.3
  JDDGAC_29395 eCs1768 +1.2
  JDDGAC_29645 N.D.
Primosomal replication protein N JDDGAC_15750 priB N.D.
Primosomal replication protein N prime prime JDDGAC_11830 priC +0.1
RecA protein JDDGAC_24370 recA N.D.
Recombination protein RecR JDDGAC_11805 recR +0.1
Replicative DNA helicase (EC 3.6.1.-) JDDGAC_16565 dnaB N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) JDDGAC_23220 recJ +0.8
Transcription-repair coupling factor JDDGAC_07130 mfd -1.8

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