SEED Subsystem: DNA-replication in Escherichia coli ECOR27

Experiments:

Role Gene Name Bas31  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) NOLOHH_07425 recG -1.9
ATP-dependent DNA helicase RecQ NOLOHH_06490 recQ -0.1
  NOLOHH_08650 -0.1
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA NOLOHH_07150 dnaA N.D.
  NOLOHH_13475 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) NOLOHH_16710 ruvC N.D.
DNA polymerase I (EC 2.7.7.7) NOLOHH_06280 polA N.D.
  NOLOHH_12050 xni -0.1
DNA polymerase II (EC 2.7.7.7) NOLOHH_03140 polB +0.0
DNA polymerase III alpha subunit (EC 2.7.7.7) NOLOHH_02480 dnaE N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) NOLOHH_07160 dnaN N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) NOLOHH_04065 holC +0.0
DNA polymerase III delta prime subunit (EC 2.7.7.7) NOLOHH_21075 holB N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) NOLOHH_23715 holA N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) NOLOHH_02310 dnaQ N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) NOLOHH_03615 holD N.D.
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) NOLOHH_01095 dnaX N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) NOLOHH_16905 holE -5.2
DNA primase (EC 2.7.7.-) NOLOHH_10450 dnaG N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN NOLOHH_12815 recN -0.3
DNA replication protein DnaC NOLOHH_03675 dnaC N.D.
DNA replication terminus site-binding protein NOLOHH_18160 tus -0.3
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) NOLOHH_11940 recD -1.3
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) NOLOHH_11935 recB N.D.
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) NOLOHH_11925 recC N.D.
Helicase PriA essential for oriC/DnaA-independent DNA replication NOLOHH_05865 priA N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA NOLOHH_16725 ruvA N.D.
Holliday junction DNA helicase RuvB NOLOHH_16730 ruvB N.D.
Primosomal protein I NOLOHH_03670 dnaT N.D.
  NOLOHH_18375 +1.2
  NOLOHH_19790 -1.6
Primosomal replication protein N NOLOHH_04370 priB N.D.
Primosomal replication protein N prime prime NOLOHH_01110 priC -0.7
RecA protein NOLOHH_12545 recA -3.8
Recombination protein RecR NOLOHH_01085 recR +0.2
Replicative DNA helicase (EC 3.6.1.-) NOLOHH_05180 dnaB N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) NOLOHH_11505 recJ -0.4
Transcription-repair coupling factor NOLOHH_20995 mfd +0.1

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