SEED Subsystem: Nitrate and nitrite ammonification in Pseudomonas fluorescens GW456-L13

Experiments:

Role Gene Name nitrate (N)  
⨯
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) PfGW456L13_4103 -3.0
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC PfGW456L13_4388 +0.8
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein PfGW456L13_4097 -0.5
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit PfGW456L13_4389 +0.1
Nitrate/nitrite response regulator protein PfGW456L13_3557 -0.3
Nitrate/nitrite sensor protein (EC 2.7.3.-) No genes
Nitrate/nitrite transporter PfGW456L13_3318 -0.0
  PfGW456L13_3929 +0.1
  PfGW456L13_4099 -0.4
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) PfGW456L13_4101 -4.3
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) PfGW456L13_4102 N.D.
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD PfGW456L13_4391 +0.1
Periplasmic nitrate reductase component NapE PfGW456L13_4392 +0.2
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) PfGW456L13_4390 +0.0
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase beta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase delta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT PfGW456L13_4098 -5.2

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