SEED Subsystem: Nitrate and nitrite ammonification in Agrobacterium fabrum C58

Experiments:

Role Gene Name 5-Aminolevulinic (N)  
⨯
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) Atu3900 +0.6
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC Atu4410 +0.4
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) Atu4406 -0.2
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein Atu3903 -0.1
Nitrate ABC transporter, nitrate-binding protein Atu0708 +0.2
  Atu3905 -0.1
  Atu3906 +1.7
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit Atu4409 -0.1
Nitrate/nitrite response regulator protein No genes
Nitrate/nitrite sensor protein (EC 2.7.3.-) No genes
Nitrate/nitrite transporter Atu2708 -0.2
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Atu3902 +0.0
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) Atu3901 +0.1
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) Atu1013 N.D.
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE Atu4405 +0.3
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) Atu4408 +0.0
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase beta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase delta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT Atu3907 -0.1

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