SEED Subsystem: Glycine and Serine Utilization in Agrobacterium fabrum C58

Experiments:

Role Gene Name L-Histidine (N)  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Atu5118 +0.2
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Atu1464 -0.7
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Atu1400 -0.1
  Atu3027 -0.1
  Atu3109 -0.1
  Atu3399 -0.1
  Atu3706 -5.7
  Atu4048 +0.1
  Atu4507 +0.1
  Atu4691 +0.2
  Atu5222 N.D.
  Atu5328 N.D.
  Atu5399 N.D.
  Atu5474 +0.1
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator No genes
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter No genes
Glycerate kinase (EC 2.7.1.31) No genes
Glycine cleavage system H protein Atu1463 -0.8
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Atu1462 -0.8
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) No genes
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) Atu1759 +1.8
L-serine dehydratase, beta subunit (EC 4.3.1.17) Atu1759 +1.8
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) Atu3707 -6.3
Phosphoserine phosphatase (EC 3.1.3.3) Atu2040 -6.5
Serine hydroxymethyltransferase (EC 2.1.2.1) Atu1165 N.D.
  Atu4314 +0.1
Serine transporter No genes
Seryl-tRNA synthetase (EC 6.1.1.11) Atu1703 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) Atu2735 -0.0
  Atu4759 +0.0

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