SEED Subsystem: tRNA processing in Pseudomonas simiae WCS417

Experiments:

Role Gene Name methylglyoxal 0.032 vol%  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) PS417_22050 +0.7
Ribonuclease D (EC 3.1.26.3) PS417_07375 +1.1
Ribonuclease P protein component (EC 3.1.26.5) No genes
Ribonuclease PH (EC 2.7.7.56) PS417_27810 -3.7
Ribonuclease T (EC 3.1.13.-) PS417_05625 N.D.
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) PS417_06345 -0.1
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) PS417_05870 -0.2
  PS417_18565 N.D.
tRNA pseudouridine synthase B (EC 4.2.1.70) PS417_23960 N.D.
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase PS417_24625 -0.7
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) PS417_05215 N.D.
tRNAHis-5'-guanylyltransferase No genes

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