SEED Subsystem: Pyrimidine utilization in Escherichia coli BW25113

Experiments:

Role Gene Name LB  
⨯
Beta-ureidopropionase (EC 3.5.1.6) No genes
Dihydropyrimidinase (EC 3.5.2.2) No genes
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) b2147 yeiA -0.1
Possible hydrolase or acyltransferase RutD in novel pyrimidine catabolism pathway No genes
Possible pyrimidine permease in reductive pathway No genes
Possible ring-opening amidohydrolase RutC in novel pyrimidine catabolism pathway No genes
Predicted amidohydrolase RutB in novel pyrimidine catabolism pathway b1011 b1011 +0.1
Predicted flavin reductase RutF in novel pyrimidine catabolism pathway b1007 b1007 -0.2
Predicted monooxygenase RutA in novel pyrimidine catabolism pathway b1012 b1012 +0.2
Predicted reductase RutE in novel pyrimidine catabolism pathway b1008 ycdI +0.1
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism No genes
Pyrimidine ABC transporter, ATP-binding protein No genes
Pyrimidine ABC transporter, substrate-binding component No genes
Pyrimidine ABC transporter, transmembrane component 1 No genes
Pyrimidine ABC transporter, transmembrane component 2 No genes
Transcriptional regulator RutR of pyrimidine catabolism (TetR family) b1013 ycdC -0.4
Uracil permease b1006 ycdG +0.1
  b2497 uraA -1.3

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Or view this subsystem at the SEED (slow)