SEED Subsystem: Oxidative stress in Pseudomonas putida KT2440

Experiments:

Role Gene Name Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X  
⨯
Alkyl hydroperoxide reductase subunit C-like protein PP_0235 +0.1
  PP_1084 +0.1
Catalase (EC 1.11.1.6) PP_0115 +0.1
  PP_0481 -0.4
  PP_2887 -0.1
  PP_3668 -0.2
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins PP_2900 +2.1
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR PP_4730 N.D.
Ferroxidase (EC 1.16.3.1) PP_1210 -0.5
Fumarate and nitrate reduction regulatory protein PP_4265 -4.7
Heme oxygenase HemO, associated with heme uptake PP_1005 -1.6
  PP_2582 +0.3
Hydrogen peroxide-inducible genes activator PP_4601 +0.3
  PP_4664 +0.2
  PP_5309 -0.7
Iron-binding ferritin-like antioxidant protein PP_1210 -0.5
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) PP_0946 +0.6
Metallothionein PP_3262 N.D.
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO PP_2840 -0.0
Non-specific DNA-binding protein Dps PP_1210 -0.5
Organic hydroperoxide resistance protein PP_1859 N.D.
Organic hydroperoxide resistance transcriptional regulator PP_1860 -0.8
Paraquat-inducible protein A PP_0598 -0.0
  PP_5745 -0.1
Paraquat-inducible protein B PP_0599 +0.1
  PP_2577 -0.3
Peroxidase (EC 1.11.1.7) PP_3668 -0.2
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) PP_2356 -0.0
  PP_3364 -0.0
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR PP_2060 -0.1
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) PP_0915 N.D.
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR PP_0119 -0.6
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family PP_3233 +0.4
  PP_3287 +0.1
transcriptional regulator, Fur family No genes

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