SEED Subsystem: NAD and NADP cofactor biosynthesis global in Pseudomonas putida KT2440

Experiments:

Role Gene Name Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X  
3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) No genes
ADP-ribose pyrophosphatase (EC 3.6.1.13) PP_4919 +0.3
Amidases related to nicotinamidase PP_2562 -0.4
C-terminal domain of CinA type S No genes
C-terminal domain of CinA type S homolog No genes
Glutamine amidotransferase chain of NAD synthetase No genes
Indoleamine 2,3-dioxygenase (EC 1.13.11.52) No genes
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis No genes
Kynureninase (EC 3.7.1.3) No genes
Kynurenine 3-monooxygenase (EC 1.14.13.9) No genes
Kynurenine formamidase (EC 3.5.1.9) No genes
Kynurenine formamidase, bacterial (EC 3.5.1.9) No genes
Kynurenine formamidase, yeast-type BNA7 (EC 3.5.1.9) No genes
L-Aspartate dehydrogenase (EC 1.4.1.21) No genes
L-aspartate oxidase (EC 1.4.3.16) PP_1426 +0.0
N-Ribosylnicotinamide phosphorylase (EC 2.4.2.1) No genes
NAD kinase (EC 2.7.1.23) PP_2012 N.D.
NAD pyrophosphatase, periplasmic (EC 3.6.1.22) No genes
NAD synthetase (EC 6.3.1.5) PP_4869 N.D.
NAD transporter of endosymbionts, possible No genes
NMN 5'-nucleotidase, extracellular (EC 3.1.3.5) No genes
NMN phosphatase (EC 3.1.3.5) No genes
NMN synthetase (EC 6.3.1.-) No genes
NadR transcriptional regulator No genes
Niacin transporter NiaP No genes
Niacin transporter in yeast, DAL5 family No genes
Nicotinamidase (EC 3.5.1.19) No genes
Nicotinamidase family protein YcaC PP_0711 -0.8
  PP_5243 +0.8
  PP_5248 -0.6
  PP_5255 -0.1
Nicotinamidase/isochorismatase family protein No genes
Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) No genes
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1) No genes
Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), eukaryotic PNAT family No genes
Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) No genes
Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) No genes
Nicotinate phosphoribosyltransferase (EC 2.4.2.11) PP_4868 +1.4
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) PP_4810 N.D.
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), eukaryotic PNAT family No genes
Nicotinate-nucleotide adenylyltransferase, NadM family (EC 2.7.7.18) No genes
Nicotine adenine dinucleotide glycohydrolase (NADGH) (EC 3.2.2.5) No genes
Nudix-related transcriptional regulator NrtR No genes
Predicted N-ribosylNicotinamide CRP-like regulator No genes
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) PP_0787 +0.0
Quinolinate synthetase (EC 2.5.1.72) PP_1231 +0.1
Ribosyl nicotinamide transporter, PnuC-like PP_2860 +0.1
Ribosylnicotinamide kinase (EC 2.7.1.22) PP_2859 +0.2
Ribosylnicotinamide kinase, eukaryotic (EC 2.7.1.22) No genes
Substrate-specific component NiaX of predicted niacin ECF transporter No genes
Transcriptional repressor for NAD biosynthesis in gram-positives No genes
Tryptophan 2,3-dioxygenase (EC 1.13.11.11) No genes

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