SEED Subsystem: Inositol catabolism in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days  
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5-deoxy-glucuronate isomerase (EC 5.3.1.-) PS417_11860 -0.3
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) No genes
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase [form 2] (EC 4.1.2.29) No genes
5-keto-2-deoxygluconokinase (EC 2.7.1.92) PS417_11850 +0.2
Epi-inositol hydrolase (EC 3.7.1.-) PS417_11870 -0.1
Fe-containing alcohol dehydrogenase No genes
Glyceraldehyde-3-phosphate ketol-isomerase (EC 5.3.1.1) No genes
Inositol oxygenase (EC 1.13.99.1) No genes
Inositol transport system ATP-binding protein PS417_11890 -0.2
  PS417_12065 +0.2
Inositol transport system permease protein PS417_11895 -0.0
  PS417_12060 +0.1
Inositol transport system sugar-binding protein PS417_11070 -0.5
  PS417_11885 +0.7
  PS417_12055 +0.0
Inosose dehydratase (EC 4.2.1.44) PS417_11855 -0.2
Inosose isomerase (EC 5.3.99.-) PS417_11865 -0.1
Major myo-inositol transporter IolT No genes
Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) PS417_10925 -0.4
Minor myo-inositol transporter IolF No genes
Myo-inositol 2-dehydrogenase (EC 1.1.1.18) PS417_11080 +2.8
  PS417_11875 -0.3
  PS417_11880 -0.0
  PS417_15165 +0.3
Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) No genes
Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) No genes
Predicted transcriptional regulator of the myo-inositol catabolic operon PS417_11845 -1.0
Sodium/myo-inositol cotransporter No genes
Transcriptional repressor of the myo-inositol catabolic operon DeoR family No genes
uncharacterized domain PS417_11850 +0.2

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