SEED Subsystem: TCA Cycle in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Fraxetin 3 mM; solid stress  
⨯
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) PS417_08895 N.D.
Aconitate hydratase (EC 4.2.1.3) PS417_07515 -3.7
Aconitate hydratase 2 (EC 4.2.1.3) No genes
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) PS417_08870 N.D.
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) PS417_08905 N.D.
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) No genes
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) PS417_08900 N.D.
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) PS417_22635 N.D.
Fumarate hydratase class II (EC 4.2.1.2) PS417_11625 -0.3
  PS417_19200 -0.2
  PS417_04305 -0.3
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) PS417_16525 +0.1
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) No genes
Malate:quinone oxidoreductase (EC 1.1.5.4) PS417_07955 -1.5
  PS417_04460 N.D.
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) PS417_08885 N.D.
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) PS417_08890 N.D.
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) PS417_08915 N.D.
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) PS417_08910 N.D.
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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