SEED Subsystem: Photorespiration (oxidative C2 cycle) in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Fraxetin 3 mM; solid stress  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) PS417_08800 N.D.
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) PS417_22370 -0.1
  PS417_27255 -1.1
Catalase (EC 1.11.1.6) PS417_09290 +0.0
  PS417_10380 -0.2
  PS417_17065 +0.3
  PS417_24315 -0.1
  PS417_25405 -4.2
  PS417_00365 -0.1
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) PS417_13745 -0.1
  PS417_13970 +1.2
  PS417_22470 N.D.
Glycine cleavage system H protein PS417_22355 -0.4
  PS417_27250 +1.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) PS417_22360 +0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE No genes
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF No genes
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD No genes
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) PS417_08810 +0.1
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) PS417_26040 -0.2
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) PS417_00235 +0.1
  PS417_25730 -1.1
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) PS417_24275 -0.1
  PS417_24280 N.D.
  PS417_26195 -0.1
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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