SEED Subsystem: Oxidative stress in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Fraxetin 3 mM; solid stress  
⨯
Alkyl hydroperoxide reductase subunit C-like protein PS417_05620 -0.3
  PS417_27180 -0.2
Catalase (EC 1.11.1.6) PS417_09290 +0.0
  PS417_10380 -0.2
  PS417_17065 +0.3
  PS417_24315 -0.1
  PS417_25405 -4.2
  PS417_00365 -0.1
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins PS417_14395 -0.2
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR PS417_24075 N.D.
Ferroxidase (EC 1.16.3.1) PS417_22480 +0.9
Fumarate and nitrate reduction regulatory protein PS417_20785 +2.2
Heme oxygenase HemO, associated with heme uptake PS417_22715 -1.3
Hydrogen peroxide-inducible genes activator PS417_01275 -0.9
  PS417_21940 N.D.
  PS417_23640 -0.0
  PS417_27865 -6.5
Iron-binding ferritin-like antioxidant protein PS417_22480 +0.9
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) PS417_04315 -0.1
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO PS417_15775 -0.0
Non-specific DNA-binding protein Dps PS417_22480 +0.9
Organic hydroperoxide resistance protein PS417_08490 N.D.
  PS417_10335 -0.2
  PS417_10385 +0.0
Organic hydroperoxide resistance transcriptional regulator PS417_08495 N.D.
  PS417_08575 +0.1
Paraquat-inducible protein A PS417_03265 +0.3
  PS417_03270 -0.4
Paraquat-inducible protein B PS417_03275 -0.0
Peroxidase (EC 1.11.1.7) No genes
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) PS417_23325 +0.2
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR PS417_09440 -0.3
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) PS417_22180 N.D.
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR PS417_00385 +0.1
bacteriophytochrome heme oxygenase BphO PS417_23320 -0.1
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family PS417_00955 -0.1
  PS417_15825 -0.2
transcriptional regulator, Fur family No genes

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