SEED Subsystem: Glycine and Serine Utilization in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Fraxetin 3 mM; solid stress  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) PS417_22370 -0.1
  PS417_27255 -1.1
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) PS417_07385 +0.0
  PS417_14475 -0.1
  PS417_15020 -0.2
  PS417_27040 +1.4
  PS417_04530 -0.3
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator No genes
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter PS417_05405 +0.3
  PS417_14545 -0.1
Glycerate kinase (EC 2.7.1.31) PS417_13745 -0.1
  PS417_13970 +1.2
  PS417_22470 N.D.
Glycine cleavage system H protein PS417_22355 -0.4
  PS417_27250 +1.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) PS417_22360 +0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) PS417_05075 -0.4
  PS417_22365 +0.1
  PS417_26310 +0.1
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) PS417_08120 N.D.
Phosphoserine phosphatase (EC 3.1.3.3) PS417_09335 -0.1
  PS417_21770 N.D.
  PS417_02415 -0.2
  PS417_26895 -0.2
  PS417_26995 -1.0
Serine hydroxymethyltransferase (EC 2.1.2.1) PS417_24275 -0.1
  PS417_24280 N.D.
  PS417_26195 -0.1
Serine transporter PS417_05070 +0.1
  PS417_14995 -0.0
Seryl-tRNA synthetase (EC 6.1.1.11) PS417_16470 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) PS417_12925 -0.2

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