SEED Subsystem: DNA Repair Base Excision in Dickeya dianthicola ME23

Experiments:

Role Gene Name Stem-Upstate  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) DZA65_RS18230 N.D.
DNA polymerase I (EC 2.7.7.7) DZA65_RS05405 +0.4
  DZA65_RS22235 N.D.
DNA polymerase II (EC 2.7.7.7) DZA65_RS19305 +0.5
DNA-3-methyladenine glycosylase (EC 3.2.2.20) DZA65_RS00205 +0.1
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) No genes
Endonuclease III (EC 4.2.99.18) DZA65_RS11025 +0.3
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) DZA65_RS10155 -0.0
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) DZA65_RS00770 -1.0
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) DZA65_RS03495 -0.7
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 DZA65_RS16955 +0.2

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