SEED Subsystem: DNA Repair Base Excision in Bacteroides stercoris CC31F

Experiments:

Role Gene Name a-Cyclodextrin 2.5 mg/mL (C)  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) HMPREF1181_RS14170 N.D.
DNA polymerase I (EC 2.7.7.7) HMPREF1181_RS02070 -1.0
  HMPREF1181_RS17185 N.D.
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) HMPREF1181_RS05865 -1.2
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) No genes
Endonuclease III (EC 4.2.99.18) HMPREF1181_RS05445 -0.4
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) No genes
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) HMPREF1181_RS06545 -1.8
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 HMPREF1181_RS07795 +0.2
  HMPREF1181_RS08600 -1.6

Or select organism:

Or view this subsystem at the SEED (slow)