SEED Subsystem: Photorespiration (oxidative C2 cycle) in Variovorax sp. OAS795

Experiments:

Role Gene Name Adenine (C)  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) ABID97_RS00265 -0.4
  ABID97_RS22330 -1.2
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) No genes
Catalase (EC 1.11.1.6) ABID97_RS04935 -0.2
  ABID97_RS05775 -0.2
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) ABID97_RS02940 -0.1
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) No genes
Glycine cleavage system H protein ABID97_RS19650 N.D.
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) ABID97_RS19655 -0.4
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE ABID97_RS03655 +0.7
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF ABID97_RS03660 +0.4
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD ABID97_RS03650 +0.4
  ABID97_RS15850 +0.2
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) ABID97_RS22320 -4.1
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) ABID97_RS04710 +1.0
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) ABID97_RS05240 -0.4
  ABID97_RS07650 +0.2
  ABID97_RS12870 N.D.
  ABID97_RS13695 -0.0
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) ABID97_RS12845 +0.3
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) ABID97_RS12850 -0.2
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) ABID97_RS17890 N.D.
Serine--glyoxylate aminotransferase (EC 2.6.1.45) ABID97_RS15840 +0.7

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