SEED Subsystem: Arginine and Ornithine Degradation in Pseudomonas simiae WCS417

Experiments:

Role Gene Name Gly-Glu (C)  
Agmatinase (EC 3.5.3.11) PS417_20180 -0.1
Agmatine deiminase (EC 3.5.3.12) PS417_01340 +0.7
Arginase (EC 3.5.3.1) PS417_05475 +0.5
Arginine ABC transporter, ATP-binding protein ArtP No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtI No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ No genes
Arginine ABC transporter, permease protein ArtM No genes
Arginine ABC transporter, permease protein ArtQ PS417_01490 +0.3
Arginine N-succinyltransferase (EC 2.3.1.109) PS417_21700 +4.5
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) PS417_21705 +4.2
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) PS417_04005 +1.5
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) PS417_22330 -0.0
Arginine pathway regulatory protein ArgR, repressor of arg regulon PS417_21720 N.D.
Arginine permease RocE No genes
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP PS417_21725 +2.0
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein PS417_10900 -0.4
  PS417_21745 -0.3
Arginine/ornithine ABC transporter, permease protein AotM PS417_21735 +0.5
Arginine/ornithine ABC transporter, permease protein AotQ No genes
Arginine/ornithine antiporter ArcD PS417_22320 +0.3
  PS417_22325 +0.2
Biosynthetic arginine decarboxylase (EC 4.1.1.19) PS417_03005 +0.0
Carbamate kinase (EC 2.7.2.2) PS417_22340 +0.5
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) PS417_02175 +0.1
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) PS417_06395 +0.2
  PS417_01500 -0.1
  PS417_17605 +0.2
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) PS417_04710 +0.1
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) PS417_06405 -0.2
  PS417_17600 -0.0
  PS417_26110 +0.3
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) PS417_06410 -0.4
  PS417_13555 -0.1
  PS417_17595 +0.0
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) PS417_06415 -0.3
  PS417_13550 +0.0
  PS417_01495 +0.1
  PS417_17590 -0.3
  PS417_01800 -0.1
  PS417_01805 -0.1
  PS417_26100 +0.1
  PS417_28190 +0.1
N-carbamoylputrescine amidase (3.5.1.53) No genes
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) PS417_24260 +0.2
Ornithine aminotransferase (EC 2.6.1.13) No genes
Ornithine carbamoyltransferase (EC 2.1.3.3) PS417_05595 -3.7
  PS417_22335 +0.1
Ornithine cyclodeaminase (EC 4.3.1.12) PS417_10915 +0.0
  PS417_17585 +0.1
  PS417_26095 -0.0
Ornithine decarboxylase (EC 4.1.1.17) PS417_04005 +1.5
Putrescine aminotransferase (EC 2.6.1.82) No genes
Succinylarginine dihydrolase (EC 3.5.3.23) PS417_21690 +3.6
Succinylglutamate desuccinylase (EC 3.5.1.96) PS417_21680 +0.2
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) PS417_21695 +1.7
Succinylornithine transaminase (EC 2.6.1.81) PS417_21710 -1.0
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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