SEED Subsystem: Glycine and Serine Utilization in Pseudomonas simiae WCS417

Experiments:

Role Gene Name D-Alanine (C)  
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) PS417_22370 +0.1
  PS417_27255 +0.1
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) PS417_07385 -0.1
  PS417_14475 +0.2
  PS417_15020 +0.2
  PS417_27040 -4.3
  PS417_04530 -0.4
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator No genes
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter PS417_05405 -1.8
  PS417_14545 +0.1
Glycerate kinase (EC 2.7.1.31) PS417_13745 -0.1
  PS417_13970 +0.0
  PS417_22470 N.D.
Glycine cleavage system H protein PS417_22355 +0.2
  PS417_27250 -0.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) PS417_22360 -0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) PS417_05075 +0.2
  PS417_22365 +0.0
  PS417_26310 +0.1
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) PS417_08120 N.D.
Phosphoserine phosphatase (EC 3.1.3.3) PS417_09335 +0.2
  PS417_21770 N.D.
  PS417_02415 -3.9
  PS417_26895 +0.1
  PS417_26995 -3.7
Serine hydroxymethyltransferase (EC 2.1.2.1) PS417_24275 -0.0
  PS417_24280 N.D.
  PS417_26195 +0.2
Serine transporter PS417_05070 +0.1
  PS417_14995 +0.2
Seryl-tRNA synthetase (EC 6.1.1.11) PS417_16470 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) PS417_12925 -0.1

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