SEED Subsystem: Xylose utilization in Agrobacterium fabrum C58

Experiments:

Role Gene Name D-(-)-lyxose (C)  
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Acetyl xylan esterase (EC 3.1.1.41) No genes
Acetyl xylan esterase XylU (EC 3.1.1.41) No genes
Alpha-xylosidase (EC 3.2.1.-) No genes
Beta-xylosidase (EC 3.2.1.37) No genes
D-xylose 1-dehydrogenase (EC 1.1.1.175) No genes
D-xylose proton-symporter XylE No genes
D-xylose proton-symporter XylT No genes
D-xylose transport ATP-binding protein XylG Atu3200 -0.3
  Atu3574 -0.2
  Atu4487 +0.1
D-xylose-specific 1-epimerase (mutarotase) No genes
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) Atu2371 -0.1
Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) No genes
Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8) No genes
NAD(P)H-dependent D-xylose reductase (EC 1.1.1.-) No genes
Novel Xylose regulator from LacI family Atu4481 -1.6
Phosphotransferase system for xylose-containing disaccharide, EIIA component No genes
Phosphotransferase system for xylose-containing disaccharide, EIIB component No genes
Phosphotransferase system for xylose-containing disaccharide, EIIC component No genes
Phosphotransferase system for xylose-containing disaccharide, EIID component No genes
Possible alpha-xyloside ABC transporter, ATP-binding component No genes
Possible alpha-xyloside ABC transporter, permease component No genes
Possible alpha-xyloside ABC transporter, substrate-binding component No genes
Predicted xylose oligosaccharide ABC transporter, substrate-binding component No genes
Putative alpha-xylosidase (EC 3.2.1.-) No genes
Putative xylulose kinase (EC 2.7.1.17) No genes
Xylanase No genes
Xylonate dehydratase (EC 4.2.1.82) Atu2736 -0.4
Xylonolactonase (EC 3.1.1.68) No genes
Xylose ABC transporter, ATP-binding component No genes
Xylose ABC transporter, periplasmic xylose-binding protein XylF Atu3576 -0.2
Xylose ABC transporter, permease component Atu3022 +1.0
Xylose ABC transporter, permease protein XylH Atu3199 +0.0
  Atu3575 -0.4
Xylose ABC transporter, substrate-binding component No genes
Xylose activator XylR (AraC family) No genes
Xylose isomerase (EC 5.3.1.5) Atu4483 -1.5
Xylose oligosaccharides ABC transporter, ATP-binding protein 1 No genes
Xylose oligosaccharides ABC transporter, ATP-binding protein 2 No genes
Xylose oligosaccharides ABC transporter, permease protein 1 No genes
Xylose oligosaccharides ABC transporter, permease protein 2 No genes
Xylose oligosaccharides ABC transporter, sugar-binding protein No genes
Xylose-responsive transcription regulator, ROK family Atu3577 +0.7
Xyloside transporter XynT No genes
Xylulose kinase (EC 2.7.1.17) Atu4482 -6.5
predicted 2-keto-3-deoxyxylonate dehydratase No genes
predicted xylose isomerase No genes

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