SEED Subsystem: Pyrimidine utilization in Agrobacterium fabrum C58

Experiments:

Role Gene Name L-Sorbose (C)  
⨯
Beta-ureidopropionase (EC 3.5.1.6) Atu2385 -0.3
  Atu3070 +0.1
Dihydropyrimidinase (EC 3.5.2.2) Atu2386 -0.2
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) No genes
Possible hydrolase or acyltransferase RutD in novel pyrimidine catabolism pathway Atu2497 -0.2
Possible pyrimidine permease in reductive pathway No genes
Possible ring-opening amidohydrolase RutC in novel pyrimidine catabolism pathway No genes
Predicted amidohydrolase RutB in novel pyrimidine catabolism pathway Atu2499 -0.2
Predicted flavin reductase RutF in novel pyrimidine catabolism pathway Atu2495 -3.1
Predicted monooxygenase RutA in novel pyrimidine catabolism pathway Atu2500 +0.1
Predicted reductase RutE in novel pyrimidine catabolism pathway Atu2496 -0.1
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism No genes
Pyrimidine ABC transporter, ATP-binding protein Atu2388 +0.0
Pyrimidine ABC transporter, substrate-binding component Atu2391 +0.2
Pyrimidine ABC transporter, transmembrane component 1 Atu2389 -0.2
Pyrimidine ABC transporter, transmembrane component 2 Atu2390 +0.2
Transcriptional regulator RutR of pyrimidine catabolism (TetR family) Atu2384 +0.4
Uracil permease Atu3076 +0.2

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Or view this subsystem at the SEED (slow)