SEED Subsystem: Glycine and Serine Utilization in Pseudomonas sp. RS175

Experiments:

Role Gene Name Choline (C) 10 mM  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) PFR28_00656 +0.0
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) PFR28_03385 -0.2
  PFR28_04316 -0.2
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) PFR28_00714 -0.1
  PFR28_01519 +0.2
  PFR28_02144 -0.3
  PFR28_02378 +0.5
  PFR28_03622 N.D.
  PFR28_04842 -0.6
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator No genes
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter PFR28_03490 +0.2
Glycerate kinase (EC 2.7.1.31) PFR28_02469 -0.5
  PFR28_03417 +0.4
Glycine cleavage system H protein PFR28_03382 -0.0
  PFR28_04315 +0.2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) PFR28_03383 +0.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) PFR28_03384 +0.1
  PFR28_04162 -1.5
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) PFR28_00906 N.D.
Phosphoserine phosphatase (EC 3.1.3.3) PFR28_03165 +0.2
  PFR28_04279 +0.1
  PFR28_04832 -4.2
  PFR28_05105 -0.0
Serine hydroxymethyltransferase (EC 2.1.2.1) PFR28_03785 -0.1
  PFR28_03786 N.D.
  PFR28_04135 -3.6
Serine transporter PFR28_02377 +0.3
Seryl-tRNA synthetase (EC 6.1.1.11) PFR28_02604 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) No genes

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Or view this subsystem at the SEED (slow)