SEED Subsystem: Ammonia assimilation in Agrobacterium fabrum C58

Experiments:

Role Gene Name D-Galacturonic Acid (C)  
⨯
Ammonium transporter Atu2758 -0.1
Ammonium transporter family No genes
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1) No genes
Global nitrogen regulatory protein, CRP family of transcriptional regulators No genes
Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Atu0145 -0.1
  Atu0930 +0.0
  Atu1154 +0.3
  Atu3640 +0.2
  Atu3784 -4.9
  Atu4229 -0.1
  Atu4443 -0.1
Glutamate synthase [NADPH] putative GlxC chain (EC 1.4.1.13) Atu4228 +0.0
Glutamate synthase [NADPH] small chain (EC 1.4.1.13) Atu3783 -6.5
Glutamate synthase, alpha subunit domain protein No genes
Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) Atu0981 -2.6
Glutamine amidotransferase protein GlxB (EC 2.4.2.-) Atu4227 +0.1
Glutamine amidotransferase, class-II No genes
Glutamine synthetase inactivating factor IF17 No genes
Glutamine synthetase inactivating factor IF7 No genes
Glutamine synthetase type I (EC 6.3.1.2) Atu1770 -1.7
  Atu4230 +0.1
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2) Atu2416 +0.1
Glutamine synthetase type III, GlnN (EC 6.3.1.2) No genes
Glutamine synthetase, clostridia type (EC 6.3.1.2) No genes
Nitrogen regulation protein NR(I) Atu4300 -0.1
Nitrogen regulation protein NR(II) (EC 2.7.3.-) No genes
Nitrogen regulatory protein P-II Atu1769 N.D.
  Atu2757 -0.1
Nitrogen regulatory protein P-II, glnK No genes
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2) No genes
[Protein-PII] uridylyltransferase (EC 2.7.7.59) Atu0346 -0.7
ammonium/methylammonium permease No genes

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