SEED Subsystem: Choline and Betaine Uptake and Betaine Biosynthesis in Pseudomonas simiae WCS417

Experiments:

Role Gene Name LB_noSalt with Chloride 1100 mM  
Alcohol dehydrogenase GbsB (type III ), essential for the utilization of choline (EC 1.1.1.1) No genes
Betaine aldehyde dehydrogenase (EC 1.2.1.8) PS417_26340 -0.6
Choline ABC transport system, ATP-binding protein OpuBA No genes
Choline ABC transport system, choline-binding protein OpuBC No genes
Choline ABC transport system, permease protein OpuBB No genes
Choline ABC transport system, permease protein OpuBD No genes
Choline binding protein A No genes
Choline binding protein D No genes
Choline dehydrogenase (EC 1.1.99.1) PS417_10560 -0.0
  PS417_26345 -0.7
Choline-sulfatase (EC 3.1.6.6) PS417_00140 -0.0
GbcA Glycine betaine demethylase subunit A PS417_26220 +0.1
GbcB Glycine betaine demethylase subunit B PS417_26215 +0.3
Glycine betaine ABC transport system permease protein No genes
Glycine betaine ABC transport system, ATP-binding protein OpuAA (EC 3.6.3.32) No genes
Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC No genes
Glycine betaine ABC transport system, permease protein OpuAB No genes
Glycine betaine ABC transport system, permease/glycine betaine-binding protein OpuABC No genes
Glycine betaine transporter OpuD No genes
Glycine betaine/L-proline ABC transporter, glycine betaine/L-proline- binding/permease protein PS417_08855 +0.2
HTH-type transcriptional regulator BetI PS417_26335 +0.7
High-affinity choline uptake protein BetT PS417_01120 -0.4
  PS417_26330 -0.5
L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) PS417_26325 +0.0
  PS417_04010 -1.3
L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) PS417_26320 -0.0
  PS417_04015 -1.0
  PS417_04025 -1.4
L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) PS417_10825 +0.4
  PS417_00135 -0.0
  PS417_01770 -0.2
  PS417_26275 +0.1
  PS417_26315 +0.0
  PS417_04020 -1.3
Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA No genes
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB No genes
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD No genes
Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC No genes
Sarcosine oxidase alpha subunit (EC 1.5.3.1) PS417_26180 -0.1
Sarcosine oxidase beta subunit (EC 1.5.3.1) PS417_10910 -0.5
  PS417_11550 -0.4
  PS417_26190 -0.3
Sarcosine oxidase delta subunit (EC 1.5.3.1) PS417_26185 -0.5
Sarcosine oxidase gamma subunit (EC 1.5.3.1) PS417_26175 -0.4

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