SEED Subsystem: Bacterial RNA-metabolizing Zn-dependent hydrolases in Pseudomonas putida KT2440

Experiments:

Role Gene Name Propandiamine (N)  
⨯
Cell division protein FtsK PP_4004 -1.6
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) No genes
Ferric uptake regulation protein FUR PP_4730 N.D.
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
Metallo-beta-lactamase family protein, RNA-specific PP_1775 +0.0
  PP_3291 -0.0
Peptide deformylase (EC 3.5.1.88) PP_0068 N.D.
  PP_4559 -0.1
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) PP_4708 N.D.
Protein of unknown function DUF1447 No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) PP_0697 -2.3
Transcriptional regulator in cluster with Zn-dependent hydrolase No genes
Trk system potassium uptake protein TrkA PP_0065 -0.5
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA No genes
Zn-dependent hydrolase, RNA-metabolising No genes
Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog No genes
Zn-dependent hydrolase, RNA-metabolising, CPSF 73 kDa analog No genes
cytochrome d ubiquinol oxidase, subunit II-related protein No genes

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