SEED Subsystem: Lysine degradation in Pseudomonas putida KT2440

Experiments:

Role Gene Name L-Pipecolic Acid (N)  
⨯
5-aminopentanamidase (EC 3.5.1.30) No genes
5-aminovalerate aminotransferase (EC 2.6.1.48) PP_0214 -0.0
Beta-lysine acetyltransferase (EC 2.3.1.-) No genes
Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) PP_3591 -0.5
Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) No genes
L-aminoadipate-semialdehyde dehydrogenase large subunit (EC 1.2.1.31) PP_2563 -0.0
L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3) No genes
L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3) No genes
L-lysine aminomutase regulator No genes
L-lysine permease PP_0699 -0.1
L-pipecolate dehydrogenase (EC 1.5.99.3) PP_5258 -3.0
L-pipecolate oxidase (1.5.3.7) PP_5257 -2.4
Lysine 2,3-aminomutase (EC 5.4.3.2) No genes
Lysine 2-monooxygenase (EC 1.13.12.2) PP_0383 +0.0
Lysine decarboxylase (EC 4.1.1.18) No genes
Lysine decarboxylase 2, constitutive (EC 4.1.1.18) No genes
Lysine decarboxylase, inducible (EC 4.1.1.18) PP_4140 +0.0
Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR) No genes
Lysine/cadaverine antiporter membrane protein CadB No genes
Outer membrane porin, OprD family PP_0046 -0.1
  PP_0234 +0.2
  PP_0268 +0.0
  PP_0883 -0.0
  PP_1206 +0.2
  PP_2754 -0.0
  PP_3630 -0.1
  PP_4465 +0.1
  PP_5250 -0.0
Saccharopine dehydrogenase (EC 1.5.1.9) No genes
Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC 1.5.1.7) No genes
Saccharopine dehydrogenase [NADP , L-glutamate-forming] (EC 1.5.1.10) No genes
Transcriptional activator of cad operon No genes

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