SEED Subsystem: Ribosome biogenesis bacterial in Agrobacterium fabrum C58

Experiments:

Role Gene Name Streptomycin 200 ug/mL  
⨯
16S rRNA processing protein RimM Atu2700 N.D.
Dimethyladenosine transferase (EC 2.1.1.-) No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
LSU m3Psi1915 methyltransferase RlmH Atu2776 -0.5
LSU m5C1962 methyltransferase RlmI No genes
RNA pseudouridylate synthase, group 1 No genes
Ribonuclease E (EC 3.1.26.12) No genes
Ribonuclease M5 (EC 3.1.26.8) No genes
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) Atu4041 +1.1
Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) Atu1471 N.D.
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) Atu2443 N.D.
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) Atu2072 -2.1
Ribosomal protein S6 glutaminyl transferase No genes
Ribosomal-protein-L7p-serine acetyltransferase No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Atu0353 -4.9
Ribosomal-protein-S5p-alanine acetyltransferase Atu0785 +0.0
Similar to ribosomal large subunit pseudouridine synthase A No genes
Similar to ribosomal large subunit pseudouridine synthase A, group 2 No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type No genes
Similar to ribosomal large subunit pseudouridine synthase D, CAC1266-type No genes
Similar to ribosomal large subunit pseudouridine synthase D, TTE1780-type No genes
hypothetical protein sometimes fused to ribosomal protein S6 glutaminyl transferase No genes
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) Atu2701 N.D.

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