SEED Subsystem: Polyhydroxybutyrate metabolism in Agrobacterium fabrum C58

Experiments:

Role Gene Name Chloramphenicol 12.5 ug/mL  
⨯
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) Atu0503 +0.1
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) Atu3597 +1.7
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) Atu0503 +0.1
3-ketoacyl-CoA thiolase (EC 2.3.1.16) Atu4823 -0.5
Acetoacetyl-CoA reductase (EC 1.1.1.36) Atu2770 -0.9
Acetoacetyl-CoA synthetase (EC 6.2.1.16) Atu4130 -0.1
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) No genes
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Atu0990 -0.2
  Atu2308 +0.3
  Atu4131 -0.5
  Atu4839 +0.2
D-beta-hydroxybutyrate permease No genes
Enoyl-CoA hydratase (EC 4.2.1.17) Atu0733 -0.2
  Atu1417 -0.6
Intracellular PHB depolymerase (EC 3.1.1.-) Atu0015 +0.6
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase Atu1604 -1.2
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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