SEED Subsystem: DNA Repair Base Excision in Pseudomonas simiae WCS417

Experiments:

Role Gene Name R2A with Polymyxin B sulfate 0.002 mg/ml  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC PS417_06420 -0.0
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD PS417_13125 -0.3
DNA ligase (EC 6.5.1.2) PS417_20865 N.D.
  PS417_26460 -0.1
DNA polymerase I (EC 2.7.7.7) PS417_00405 -0.7
DNA polymerase II (EC 2.7.7.7) PS417_09565 -0.0
DNA-3-methyladenine glycosylase (EC 3.2.2.20) PS417_00065 -0.8
  PS417_15050 -0.1
  PS417_16410 N.D.
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) PS417_22315 -0.3
  PS417_24750 +0.0
Endonuclease III (EC 4.2.99.18) PS417_05655 +0.3
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) PS417_22575 -0.4
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) PS417_26870 -0.0
Ku domain protein PS417_13130 N.D.
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PS417_22855 -0.3
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 PS417_07035 -1.3

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