SEED Subsystem: DNA Repair Base Excision in Escherichia coli BW25113

Role	Gene	Name	T7_phage 0.00015625 MOI TC3
ATP-dependent DNA ligase (EC 6.5.1.1)	No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC	No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD	No genes
DNA ligase (EC 6.5.1.2)	b2411	ligA	N.D.
DNA polymerase I (EC 2.7.7.7)	b2798	ygdG	-0.3
	b3863	polA	+4.2
DNA polymerase II (EC 2.7.7.7)	b0060	polB	-0.4
DNA-3-methyladenine glycosylase (EC 3.2.2.20)	b3549	tag	+0.3
DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	b2068	alkA	-0.3
Endonuclease III (EC 4.2.99.18)	b1633	nth	+0.1
Endonuclease VIII	b0714	nei	+0.0
Exodeoxyribonuclease I (EC 3.1.11.1)	b2011	sbcB	+3.1
Flap structure-specific endonuclease (EC 3.-.-.-)	No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	b3635	mutM	-0.2
Ku domain protein	No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	b2892	recJ	+2.3
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog	No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog	No genes
Uracil-DNA glycosylase, family 1	b2580	ung	+0.3