SEED Subsystem: Alginate metabolism in Pseudomonas putida KT2440

Experiments:

Role Gene Name ferulate (C); with MOPS  
⨯
Alginate biosynthesis protein Alg8 PP_1287 -0.4
Alginate biosynthesis protein AlgX PP_1282 -0.1
Alginate biosynthesis transcriptional activator PP_4470 +1.0
Alginate lyase (EC 4.2.2.3) No genes
Alginate lyase precursor (EC 4.2.2.3) PP_1281 +0.2
GDP-mannose 6-dehydrogenase (EC 1.1.1.132) PP_1288 +0.1
Hexuronate transporter PP_1710 -0.0
  PP_2604 +0.1
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) No genes
Mannose-6-phosphate isomerase (EC 5.3.1.8) PP_2071 +0.5
  PP_3568 N.D.
  PP_4860 -1.5
Pectin degradation protein KdgF No genes
Phosphomannomutase (EC 5.4.2.8) PP_1777 +1.4
  PP_5288 +0.5
Poly(beta-D-mannuronate) C5 epimerase precursor (EC 5.1.3.-) No genes
Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) PP_1280 -0.1
RNA polymerase sigma-H factor AlgT PP_1427 +0.2
alginate biosynthesis protein AlgJ No genes
alginate o-acetyltransferase AlgF No genes
outer membrane protein AlgE No genes
poly(beta-D-mannuronate) lyase (EC 4.2.2.3) No genes

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