SEED Subsystem: LOS core oligosaccharide biosynthesis in Escherichia coli BW25113

Experiments:

Role Gene Name M9 Glucose 2% aerobic  
3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) No genes
ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) b3619 rfaD -1.4
ADP-heptose synthase (EC 2.7.-.-) b3052 rfaE -0.8
ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) b3620 rfaF -0.7
Beta-1,3-glucosyltransferase No genes
Beta-1,4-galactosyltransferase b3615 yibD -0.1
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) b0200 gmhB -3.2
D-glycero-beta-D-manno-heptose 7-phosphate kinase b3052 rfaE -0.8
Heptosyltransferase family protein, lipopolysaccharide core biosynthesis No genes
Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) b3623 rfaK -1.3
Lipopolysaccharide 1,6-galactosyltransferase (EC 2.4.1.-) b3628 rfaB +0.2
Lipopolysaccharide core biosynthesis glycosyltransferase, group 2 family protein (EC 2.4.1.-) No genes
Lipopolysaccharide core biosynthesis protein RfaS b3629 rfaS -0.6
Lipopolysaccharide core biosynthesis protein RfaY b3625 rfaY -0.2
Lipopolysaccharide core biosynthesis protein RfaZ b3624 rfaZ -1.0
Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase b3630 rfaP -0.3
Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) b3621 rfaC -0.7
Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-) b3632 rfaQ +0.3
O-antigen ligase b3622 rfaL -1.1
Phosphoheptose isomerase (EC 5.3.1.-) b3149 yraO +0.2
Phosphoheptose isomerase 1 (EC 5.3.1.-) b0222 lpcA -1.1
Phosphoheptose isomerase 2 (EC 5.3.1.-) No genes
Putative two-domain glycosyltransferase No genes
UDP-galactopyranose mutase (EC 5.4.99.9) b2036 glf -0.1
UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase WaaW (EC 2.4.1.-) No genes
UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,2-glucosyltransferase (EC 2.4.1.58) No genes
UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) b3627 rfaI +0.1
UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) b3631 rfaG -0.3

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