SEED Subsystem: Protocatechuate branch of beta-ketoadipate pathway in Alteromonas macleodii MIT1002

Experiments:

Role Gene Name Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5  
⨯
3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) No genes
3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) No genes
3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) No genes
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase No genes
4-carboxymuconolactone decarboxylase (EC 4.1.1.44) No genes
Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) MIT1002_00238 -0.2
  MIT1002_03878 +0.4
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) No genes
Pca regulon regulatory protein PcaR No genes
PhaK-like protein No genes
Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) No genes
Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) No genes
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) MIT1002_02001 +0.5
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) MIT1002_02000 +1.4
dicarboxylic acid transporter PcaT No genes

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