SEED Subsystem: D-ribose utilization in Paraburkholderia sabiae LMG 24235

Experiments:

Role Gene Name Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days  
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Predicted nucleoside ABC transporter, ATP-binding component No genes
Predicted nucleoside ABC transporter, permease 1 component No genes
Predicted nucleoside ABC transporter, permease 2 component No genes
Predicted nucleoside ABC transporter, substrate-binding component No genes
Predicted regulator of ribose utilization, LacI family No genes
Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5) No genes
Ribokinase (EC 2.7.1.15) QEN71_RS07360 -1.4
  QEN71_RS20205 +1.3
  QEN71_RS35905 +0.0
  QEN71_RS43080 +0.2
Ribose 5-phosphate isomerase A (EC 5.3.1.6) QEN71_RS22905 N.D.
Ribose 5-phosphate isomerase B (EC 5.3.1.6) No genes
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) QEN71_RS00535 +0.1
  QEN71_RS07345 +2.8
  QEN71_RS17255 +0.1
  QEN71_RS20220 -0.0
  QEN71_RS24255 -0.2
  QEN71_RS25300 -0.3
  QEN71_RS35785 -0.1
  QEN71_RS36060 +0.1
  QEN71_RS38410 -0.3
  QEN71_RS38600 +0.3
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) No genes
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) QEN71_RS07335 +1.5
  QEN71_RS38420 -0.4
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) QEN71_RS00525 -0.5
  QEN71_RS07350 +3.1
  QEN71_RS09130 +0.9
  QEN71_RS09135 -0.1
  QEN71_RS11415 +0.2
  QEN71_RS11710 +0.5
  QEN71_RS17250 N.D.
  QEN71_RS20210 +0.7
  QEN71_RS20225 -0.1
  QEN71_RS24250 +0.0
  QEN71_RS25295 +0.3
  QEN71_RS32580 -0.5
  QEN71_RS36055 -0.2
  QEN71_RS38405 +0.7
Ribose operon repressor QEN71_RS07355 -1.1
  QEN71_RS09400 -0.5
  QEN71_RS25935 -0.2
  QEN71_RS37705 +0.5
Ribose/xylose/arabinose/galactoside ABC-type transport systems, ATP-binding protein (EC 3.6.3.17) No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, periplasmic sugar binding protein No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 1 No genes
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component 2 No genes

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