SEED Subsystem: Bacterial Chemotaxis in Paraburkholderia sabiae LMG 24235

Experiments:

Role Gene Name Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days  
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Aerotaxis sensor receptor protein QEN71_RS17085 -0.4
Chemotaxis protein CheC -- inhibitor of MCP methylation QEN71_RS16455 -0.5
  QEN71_RS16460 -0.4
Chemotaxis protein CheD QEN71_RS28990 +2.4
Chemotaxis protein CheV (EC 2.7.3.-) QEN71_RS38230 -0.3
Chemotaxis protein CheX No genes
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) QEN71_RS00880 +0.5
  QEN71_RS10055 +0.0
  QEN71_RS10545 -0.5
  QEN71_RS16575 +0.1
  QEN71_RS16780 +0.2
  QEN71_RS19185 +0.1
  QEN71_RS19225 +0.4
  QEN71_RS19230 +0.1
  QEN71_RS28995 +4.6
  QEN71_RS33410 +0.3
  QEN71_RS36100 -0.1
  QEN71_RS37690 -0.0
  QEN71_RS39005 -0.4
  QEN71_RS39065 -1.1
  QEN71_RS39480 -0.1
  QEN71_RS40860 N.D.
  QEN71_RS40865 +0.2
  QEN71_RS43175 -0.1
  QEN71_RS43220 +0.3
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY QEN71_RS07940 +0.9
  QEN71_RS13065 N.D.
  QEN71_RS16770 +0.5
  QEN71_RS20950 N.D.
  QEN71_RS28980 +4.0
  QEN71_RS29015 -0.4
Chemotaxis response - phosphatase CheZ QEN71_RS28975 -0.5
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) QEN71_RS10070 +4.3
  QEN71_RS16775 -1.7
  QEN71_RS19190 +0.4
  QEN71_RS28985 -0.6
  QEN71_RS33415 -0.0
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) QEN71_RS01150 -0.0
  QEN71_RS11780 -0.2
  QEN71_RS28705 +0.1
  QEN71_RS28710 -0.1
Flagellar motor switch protein FliG QEN71_RS28800 +2.9
Flagellar motor switch protein FliM QEN71_RS28830 +4.0
Flagellar motor switch protein FliN QEN71_RS28835 N.D.
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) No genes
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE No genes
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) QEN71_RS00920 +0.3
  QEN71_RS01560 +0.7
  QEN71_RS01855 +0.7
  QEN71_RS05130 +1.2
  QEN71_RS07365 +0.6
  QEN71_RS08895 +0.7
  QEN71_RS10045 -0.0
  QEN71_RS10130 +0.3
  QEN71_RS11680 -0.7
  QEN71_RS12490 -0.1
  QEN71_RS14460 -0.3
  QEN71_RS15500 +1.2
  QEN71_RS17275 +0.2
  QEN71_RS17325 +0.6
  QEN71_RS25560 -0.4
  QEN71_RS29000 +1.0
  QEN71_RS30615 +0.0
  QEN71_RS31185 -0.0
  QEN71_RS33505 N.D.
  QEN71_RS37685 +0.2
  QEN71_RS38635 +1.1
  QEN71_RS38655 -0.1
  QEN71_RS38985 +0.1
  QEN71_RS39685 -0.0
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) No genes
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein) No genes
Positive regulator of CheA protein activity (CheW) QEN71_RS29005 +4.4
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) QEN71_RS00540 -0.0
  QEN71_RS11420 +0.2
  QEN71_RS17260 -0.1
  QEN71_RS25290 -0.6
Signal transduction histidine kinase CheA (EC 2.7.3.-) QEN71_RS09975 +0.1
  QEN71_RS13075 +0.2
  QEN71_RS13080 -0.0
  QEN71_RS29010 +4.1
  QEN71_RS30650 -0.1
  QEN71_RS39380 +0.1
  QEN71_RS42405 +0.3

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