SEED Subsystem: tRNA processing in Paraburkholderia sabiae LMG 24235

Experiments:

Role Gene Name Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) QEN71_RS05185 -0.4
  QEN71_RS13085 +0.4
  QEN71_RS18410 +0.3
  QEN71_RS37500 +0.6
Ribonuclease D (EC 3.1.26.3) No genes
Ribonuclease P protein component (EC 3.1.26.5) QEN71_RS29675 -0.8
Ribonuclease PH (EC 2.7.7.56) QEN71_RS03645 +0.4
Ribonuclease T (EC 3.1.13.-) No genes
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) No genes
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) QEN71_RS06405 +0.1
  QEN71_RS17635 -0.8
tRNA pseudouridine synthase B (EC 4.2.1.70) QEN71_RS23090 -1.2
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase QEN71_RS02195 -0.3
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) QEN71_RS06995 N.D.
tRNAHis-5'-guanylyltransferase No genes

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