SEED Subsystem: Nitrate and nitrite ammonification in Paraburkholderia sabiae LMG 24235

Experiments:

Role Gene Name Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days  
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Assimilatory nitrate reductase large subunit (EC:1.7.99.4) QEN71_RS37800 +0.0
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC No genes
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein QEN71_RS12555 +0.1
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit No genes
Nitrate/nitrite response regulator protein QEN71_RS33915 +0.1
  QEN71_RS34135 +0.6
Nitrate/nitrite sensor protein (EC 2.7.3.-) QEN71_RS34195 +0.2
Nitrate/nitrite transporter QEN71_RS10450 +1.2
  QEN71_RS11600 +0.2
  QEN71_RS12645 -0.1
  QEN71_RS15850 +0.2
  QEN71_RS24935 +0.1
  QEN71_RS25845 +0.1
  QEN71_RS30530 +0.2
  QEN71_RS31040 +0.5
  QEN71_RS31195 +0.1
  QEN71_RS34355 -0.0
  QEN71_RS34370 +0.1
  QEN71_RS36010 +0.9
  QEN71_RS37815 +0.2
  QEN71_RS37835 N.D.
  QEN71_RS38390 -0.0
  QEN71_RS39525 +0.1
  QEN71_RS41395 -0.2
  QEN71_RS41450 +0.1
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) QEN71_RS37810 +0.2
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) QEN71_RS37805 -0.4
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) No genes
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) QEN71_RS10425 +1.3
Respiratory nitrate reductase beta chain (EC 1.7.99.4) QEN71_RS10430 +0.9
Respiratory nitrate reductase delta chain (EC 1.7.99.4) QEN71_RS10435 +0.8
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) QEN71_RS10440 +0.7
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT QEN71_RS12550 -0.4

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