SEED Subsystem: DNA Repair Base Excision in Escherichia coli ECRC102

Experiments:

Role Gene Name TP9  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) NIAGMN_19985 ligA N.D.
DNA polymerase I (EC 2.7.7.7) NIAGMN_11905 polA N.D.
  NIAGMN_17940 xni +0.0
DNA polymerase II (EC 2.7.7.7) NIAGMN_08645 polB -0.0
DNA-3-methyladenine glycosylase (EC 3.2.2.20) NIAGMN_13800 tag -0.2
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) NIAGMN_22200 alkA -0.2
Endonuclease III (EC 4.2.99.18) NIAGMN_00540 nth +0.6
Endonuclease VIII NIAGMN_05045 nei +0.1
Exodeoxyribonuclease I (EC 3.1.11.1) NIAGMN_22510 sbcB +1.3
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) NIAGMN_13395 -0.2
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) NIAGMN_17345 recJ -3.5
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 NIAGMN_19110 ung +0.1

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