SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Variovorax sp. OAS795

Experiments:

Role Gene Name L-Phenylalanine (C)  
⨯
COG2047: Uncharacterized protein (ATP-grasp superfamily) No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 ABID97_RS07295 +1.4
GTP cyclohydrolase I (EC 3.5.4.16) type 1 ABID97_RS07305 N.D.
GTP cyclohydrolase I (EC 3.5.4.16) type 2 No genes
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) ABID97_RS05955 +0.0
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) ABID97_RS15680 +0.7
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily ABID97_RS00525 -0.1
  ABID97_RS01670 -0.2
  ABID97_RS03305 +0.0
  ABID97_RS04330 +0.4
  ABID97_RS05625 -0.1
  ABID97_RS05790 +0.1
  ABID97_RS10645 -0.6
  ABID97_RS11105 -0.0
  ABID97_RS13970 -0.2
  ABID97_RS21400 -0.0
  ABID97_RS22665 +0.1
  ABID97_RS22675 -0.1
Putative preQ0 transporter No genes
Queuosine Biosynthesis QueC ATPase No genes
Queuosine Biosynthesis QueE Radical SAM ABID97_RS07425 N.D.
Queuosine biosynthesis QueD, PTPS-I No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB ABID97_RS23630 +1.1
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) ABID97_RS01590 -0.6
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase ABID97_RS18025 -0.1
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) ABID97_RS01595 -0.1

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